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- Data science infrastructure for agricultural sustainability and food security
- Developing low frequency filters for cancer variant calling using VarDict
- Validating small RNA analysis with miRQC
- Validated variant calling with human genome build 38
- Validating multiple cancer variant callers and prioritization in tumor-only samples
- Benchmarking variation and RNA-seq analyses on Amazon Web Services with Docker
- Validating generalized incremental joint variant calling with GATK HaplotypeCaller, FreeBayes, Platypus and samtools
- Validated whole genome structural variation detection using multiple callers
- Whole genome trio variant calling evaluation: low complexity regions, GATK VQSR and high depth filters