Changelog

bcbioR 0.3.1

• Fix bugs in RNAseq
• Add function to set up library

bcbioR 0.3.0

• re-structure templates
• Add text with best practices
• Reproducibility:
  • test data for RNAseq, singlecell, CHIPseq
• Base project:
  • Guidelines to create repo easily
  • Example Rmd with headers and aesthetics
• RNASEQ
  • Use provenance for FA in DE report
  • Support multiple comparisons
• New templates:
  • methylation - draft
  • singcell cell QC and Inegration - stable
  • scQC shiny app - stable
  • chipseq QC and Diffbind - beta
  • COSMX - draft

bcbioR 0.1.3

• fix duplicated gene names
• Add combatseq
• Add draft templates for TEAseq, COSMX
• Adapt templates to nf-core rnaseq
• Fix when sample start by number
• Fix when rRNA rate is missing
• Add by sample plots in QC
• Add function to check nfcore samplesheet
• Add PCA with variance analysis
• Minor details fixed in QC RNAseq report
• Correct metric for rRNA and tRNA

bcbioR 0.1.1

• Add page to github
• Make CHECK to pass
• Add vignette