Function reference • bcbioR

All functions

bcbio_nfcore_check(): Function to check samplesheet for nf-core

bcbio_set_project(): Function to help with project name used for parent folder

bcbio_templates(): Function to help deploy analysis folder inside a project folder

bcbio_vsd_data: varianceStabilizingTransformation Object from Test Data

cb_friendly_colors: list of colorblind-friendly colors, developed by James and client

cb_friendly_cols(): fetch color from list by name

cb_friendly_pal(): access cb friendly palette by name, reversing if necessary

cb_friendly_palettes: define main colorblind-friendly palette as well as sub-palettes

list_cb_friendly_cols(): list cb friendly colors

scale_color_cb_friendly(): use cb friendly colors as color aesthetic with ggplot

scale_fill_cb_friendly(): use cb friendly colors as fill aesthetic with ggplot