Function to check samplesheet for nf-core

Usage

bcbio_nfcore_check(file)

Arguments

file: path to CSV file for nf-core

Examples


bcbio_nfcore_check(system.file("extdata", "rnaseq_good.csv", package = "bcbioR") )
#> Rows: 6 Columns: 8
#> ── Column specification ────────────────────────────────────────────────────────
#> Delimiter: ","
#> chr (8): sample, fastq_1, fastq_2, strandedness, tissue, sex, 4_weeks, bone_...
#> 
#> ℹ Use `spec()` to retrieve the full column specification for this data.
#> ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message.
#> All good.