This function contains Rmd, R, md, files that help to structure
an analysis following HCBC best-practices.
For rnaseq, it will deploy: QC and DE Rmd with additional files to help
to facilitate the analysis as needed.
Usage
bcbio_templates(type = "rnaseq", outpath)
Arguments
- type
string indicating the type of analysis, supported:
base
rnaseq, scrnaseq,
teaseq
cosmx
- outpath
string path indicating where to copy all the files to
Details
Normally these helper files are inside a report folder inside a
project folder.
Examples
if (FALSE) {
bcbio_templates("rnaseq", "path_to_projects/project1/reports")
}